Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dadA-2D-amino-acid dehydrogenase; Oxidative deamination of D-amino acids. (422 aa)    
Predicted Functional Partners:
Rpic_4307
D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; KEGG: reu:Reut_B3726 D-amino acid dehydrogenase small subunit.
  
  
 
0.921
dadA
D-amino-acid dehydrogenase; Oxidative deamination of D-amino acids.
  
  
 
0.913
hisC-3
TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: bmu:Bmul_0510 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
  
  
  0.911
Rpic_3388
KEGG: rso:RSc3103 probable 4-hydroxyphenylpyruvate dioxygenase oxidoreductase protein; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
   
 
 0.906
Rpic_4300
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_B2773 4-hydroxyphenylpyruvate dioxygenase (Hpd).
   
 
 0.906
Rpic_0875
Aspartate transaminase; PFAM: aminotransferase class I and II; KEGG: rso:RSc1010 aromatic amino acid aminotransferase.
     
 0.902
Rpic_4521
PFAM: aminotransferase class IV; KEGG: rso:RS01735 putative D-alanine aminotransferase (D-aspartate aminotransferase) protein.
     
 0.902
hisC
TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: rso:RSc0905 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
  0.900
hisC-2
TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: rso:RSc2951 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
  0.900
Rpic_4502
PFAM: Aldehyde Dehydrogenase_; KEGG: reh:H16_B0737 aldehyde dehydrogenase, NAD-dependent; Belongs to the aldehyde dehydrogenase family.
  
  
 0.630
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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