Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rpic_3003PFAM: protein of unknown function DUF937; KEGG: rso:RSc2764 hypothetical protein. (199 aa)    
Predicted Functional Partners:
Rpic_1810
KEGG: reh:H16_A2188 hypothetical periplasmic protein.
   
    0.666
Rpic_3914
KEGG: bmu:Bmul_6290 hypothetical protein.
   
    0.666
Rpic_3002
Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.546
Rpic_1945
PFAM: 20S proteasome A and B subunits; KEGG: rso:RSc1602 hypothetical protein.
  
     0.534
Rpic_1645
KEGG: rso:RS05404 hypothetical signal peptide protein.
  
    0.502
Rpic_0944
KEGG: rso:RSc1077 probable transmembrane protein.
 
    0.473
Rpic_3001
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rso:RSc2762 hypothetical protein.
  
    0.468
Rpic_1647
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: reh:H16_A2186 cobalt-zinc-cadmium resistance membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
    0.432
Rpic_1808
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: reh:H16_A2186 cobalt-zinc-cadmium resistance membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
    0.432
Rpic_1970
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; KEGG: rso:RSc1584 putative transcription regulator protein.
   
    0.416
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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