STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alcAllantoicase; KEGG: rso:RSc3274 allantoicase; TIGRFAM: allantoicase; PFAM: Allantoicase region; Belongs to the allantoicase family. (336 aa)    
Predicted Functional Partners:
allA
Ureidoglycolate hydrolase; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source.
 
  0.999
Rpic_2260
Urate catabolism protein; KEGG: rso:RSc2120 hypothetical protein; TIGRFAM: urate catabolism protein; PFAM: polysaccharide deacetylase.
 
 
 0.939
ureC
TIGRFAM: urease, alpha subunit; PFAM: amidohydrolase; Urease alpha-subunit domain protein; KEGG: rso:RSc2032 urease subunit alpha.
    
  0.908
ureB
Urease, beta subunit; KEGG: rso:RSc2033 probable urease (beta subunit) protein; TIGRFAM: urease, beta subunit; PFAM: Urease beta subunit; Belongs to the urease beta subunit family.
    
  0.908
ureA
Urease, gamma subunit; KEGG: rso:RSc2035 probable urease (gamma subunit) protein; TIGRFAM: urease, gamma subunit; PFAM: Urease gamma subunit region; Belongs to the urease gamma subunit family.
    
  0.908
Rpic_3617
TIGRFAM: allantoin catabolism protein; PFAM: protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: bmu:Bmul_3330 allantoin catabolism protein.
    
  0.905
Rpic_0331
PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: rso:RSc0456 probable ATP-binding transport ABC transporter protein.
   
 
 0.747
Rpic_2115
PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rso:RSc1961 putative ATPase protein.
   
 
 0.646
Rpic_3470
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rso:RSc3273 hypothetical protein.
     
 0.565
Rpic_2256
TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin; KEGG: rso:RSc2116 putative transthyretin-like protein precursor; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
  
 0.557
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.