STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rpic_3931PFAM: amidohydrolase 2; KEGG: rso:RS05190 probable hydrolase transmembrane protein. (306 aa)    
Predicted Functional Partners:
Rpic_3932
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rso:RS05189 probable metabolite transport transmembrane protein.
 
    0.719
Rpic_3983
PFAM: Dimethylmenaquinone methyltransferase; KEGG: bch:Bcen2424_5398 dimethylmenaquinone methyltransferase.
 
   
 0.619
Rpic_3930
Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bmu:Bmul_0867 methyltransferase type 11.
       0.506
Rpic_4447
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: rso:RS05364 hypothetical protein.
 
   
 0.500
Rpic_4452
TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase; PFAM: dihydrodipicolinate synthetase; KEGG: rso:RS05369 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
  
 0.497
Rpic_3934
4-alpha-glucanotransferase; KEGG: rso:RS05187 putative 4-alpha-glucanotransferase (amylomaltase) protein; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77.
 
     0.480
Rpic_2482
PFAM: MltA-interacting MipA family protein; KEGG: rso:RSc2284 putative transmembrane protein.
  
     0.431
Rpic_4448
KEGG: rso:RSp0830 probable D-galactarate dehydratase (D-galactarate dehydrogenase) protein; TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein.
 
   
 0.424
Rpic_3006
PFAM: dihydrodipicolinate synthetase; KEGG: aav:Aave_2247 dihydrodipicolinate synthetase; Belongs to the DapA family.
 
  
 0.408
Rpic_4042
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: pol:Bpro_4512 gluconolactonase.
 
     0.405
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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