Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rpic_4530KEGG: rso:RS01748 hypothetical protein. (68 aa)    
Predicted Functional Partners:
Rpic_4529
PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: rso:RS01747 hypothetical protein.
 
    0.964
Rpic_4528
PFAM: beta-lactamase domain protein; KEGG: rso:RS01746 hypothetical protein.
 
     0.913
Rpic_4562
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: rso:RS03754 probable transcription regulator protein.
  
     0.692
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
 
     0.662
Rpic_0240
TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: rso:RSc0384 probable maleylacetoacetate isomerase (glutathione transferase zeta 1) protein.
 
     0.560
Rpic_4527
Transcriptional regulator, IclR family; PFAM: regulatory protein IclR; KEGG: rso:RS01745 probable transcription regulator protein.
 
     0.521
Rpic_4525
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: rso:RS01743 probable amino-acid composite ATP-binding transmembrane ABC transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.472
Rpic_4535
Fumarylacetoacetase; KEGG: rso:RS01759 probable fumarylacetoacetase (fumarylacetoacetate hydrolase) protein; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969.
 
     0.443
Rpic_4563
TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rso:RSp0608 probable ferredoxin reductase protein.
  
     0.435
Rpic_4526
PFAM: inner-membrane translocator; KEGG: rso:RS01744 probable amino-acid transmembrane ABC transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.429
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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