Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rpic_4841PFAM: glycosyl transferase family 2; KEGG: rso:RSp0288 N-glycosyltransferase PgaC. (425 aa)    
Predicted Functional Partners:
Rpic_4842
PFAM: polysaccharide deacetylase; KEGG: rso:RSp0287 putative hemin storage signal peptide protein.
 
  
 0.972
Rpic_4843
KEGG: rso:RSp0286 putative hemin-binding outer membrane transmembrane protein.
 
   
 0.920
Rpic_4840
KEGG: rso:RS03675 probable transmembrane protein.
       0.773
Rpic_2470
KEGG: rso:RSc2272 probable transmembrane protein.
  
 
 0.733
Rpic_3950
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: rso:RS03712 probable transmembrane protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
  
 0.596
Rpic_3808
Multi-sensor hybrid histidine kinase; KEGG: bte:BTH_II0144 sensor protein EvgS precursor; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; SMART: extracellular solute-binding protein family 3.
 
  
 0.494
Rpic_0759
Multi-sensor hybrid histidine kinase; KEGG: bpd:BURPS668_A0191 sensor protein EvgS; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; SMART: extracellular solute-binding protein family 3.
 
  
 0.491
Rpic_4844
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; KEGG: rso:RS03679 probable transcription regulator protein.
     
 0.467
Rpic_0304
PFAM: polysaccharide deacetylase; KEGG: bur:Bcep18194_A6095 polysaccharide deacetylase.
  
 0.454
Rpic_0783
Nucleotide sugar dehydrogenase; KEGG: rso:RSc0913 probable UDP-glucose 6-dehydrogenase (UDG) oxidoreductase protein; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; Ketopantoate reductase ApbA/PanE domain protein; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase.
  
  
 0.437
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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