STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJAG_02058CMGC/SRPK protein kinase Dsk1. (516 aa)    
Predicted Functional Partners:
SJAG_01408
Cell division control protein Cdc5.
    
   0.993
SJAG_00425
mRNA export factor Srp2.
    
 0.962
SJAG_03995
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.876
SJAG_04071
SR family protein Srp1.
    
 0.852
SJAG_04914
RNA-binding protein Rsd1.
    
 
 0.807
SJAG_04949
Srp1 family splicing factor.
    
 0.751
SJAG_05009
U1 snRNP-associated protein Usp101.
    
 0.698
SJAG_00249
Zinc finger protein Bpb1.
    
 
 0.660
SJAG_00563
RNA-binding protein Cip2.
    
 0.647
SJAG_01412
RNA-binding protein.
    
 0.647
Your Current Organism:
Schizosaccharomyces japonicus
NCBI taxonomy Id: 402676
Other names: S. japonicus yFS275, Schizosaccharomyces japonicus yFS275
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.