STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJAG_02685Ubiquitin-protein ligase E4. (1018 aa)    
Predicted Functional Partners:
SJAG_03345
AAA family ATPase Cdc48.
   
 
 0.967
SJAG_00941
Rad23 Rhp23.
   
 0.963
SJAG_04384
Cdc48-Ufd1-Npl4 complex component Ufd1.
    
 
 0.963
SJAG_01134
Cdc48-Npl4-Ufd1 complex component Npl4.
    
 
 0.947
SJAG_01768
Ubiquitin-specific protease.
    
 
 0.944
SJAG_01467
UB Xdomain protein Ubx3.
    
 
 0.922
SJAG_01448
Boi family protein.
   
 0.917
SJAG_03523
Ubiquitin-like domain-containing protein.
    
 0.881
SJAG_00390
Ribosome biogenesis factor recycling AAA family ATPase.
   
 
 0.872
SJAG_01585
UBA/UAS domain-containing protein Ucp10.
    
 
 0.863
Your Current Organism:
Schizosaccharomyces japonicus
NCBI taxonomy Id: 402676
Other names: S. japonicus yFS275, Schizosaccharomyces japonicus yFS275
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