SJAG_02246 protein (Schizosaccharomyces japonicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SJAG_02246

Pentrin Pcp1. (1205 aa)

Predicted Functional Partners:

SJAG_01805

0.907

SJAG_02509

0.802

SJAG_00526

0.768

SJAG_01464

0.742

SJAG_00317

0.729

SJAG_03200

0.729

SJAG_01760

0.724

SJAG_03835

0.724

SJAG_02414

0.718

SJAG_03264

0.717

Your Current Organism:

Schizosaccharomyces japonicus

NCBI taxonomy Id: 402676
Other names: S. japonicus yFS275, Schizosaccharomyces japonicus yFS275

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SJAG_00317	SJAG_00526	B6JVB0	B6JVV9	Leucine-rich repeat protein Sog2.	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.522
SJAG_00317	SJAG_01760	B6JVB0	B6JYU0	Leucine-rich repeat protein Sog2.	Centrin.	0.532
SJAG_00317	SJAG_01805	B6JVB0	B6JYY2	Leucine-rich repeat protein Sog2.	Serine/threonine-protein kinase.	0.628
SJAG_00317	SJAG_02246	B6JVB0	B6K1Y4	Leucine-rich repeat protein Sog2.	Pentrin Pcp1.	0.729
SJAG_00317	SJAG_02509	B6JVB0	B6K2P3	Leucine-rich repeat protein Sog2.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.463
SJAG_00317	SJAG_03200	B6JVB0	B6K3L1	Leucine-rich repeat protein Sog2.	Spindle pole body docking protein Cut11.	0.468
SJAG_00526	SJAG_00317	B6JVV9	B6JVB0	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	Leucine-rich repeat protein Sog2.	0.522
SJAG_00526	SJAG_01805	B6JVV9	B6JYY2	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	Serine/threonine-protein kinase.	0.952
SJAG_00526	SJAG_02246	B6JVV9	B6K1Y4	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	Pentrin Pcp1.	0.768
SJAG_01464	SJAG_01805	B6JY04	B6JYY2	SIN component scaffold protein Sid4.	Serine/threonine-protein kinase.	0.796
SJAG_01464	SJAG_02246	B6JY04	B6K1Y4	SIN component scaffold protein Sid4.	Pentrin Pcp1.	0.742
SJAG_01464	SJAG_02509	B6JY04	B6K2P3	SIN component scaffold protein Sid4.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.773
SJAG_01464	SJAG_03200	B6JY04	B6K3L1	SIN component scaffold protein Sid4.	Spindle pole body docking protein Cut11.	0.575
SJAG_01464	SJAG_03835	B6JY04	B6K566	SIN component scaffold protein Sid4.	Spindle pole body component.	0.443
SJAG_01760	SJAG_00317	B6JYU0	B6JVB0	Centrin.	Leucine-rich repeat protein Sog2.	0.532
SJAG_01760	SJAG_01805	B6JYU0	B6JYY2	Centrin.	Serine/threonine-protein kinase.	0.782
SJAG_01760	SJAG_02246	B6JYU0	B6K1Y4	Centrin.	Pentrin Pcp1.	0.724
SJAG_01760	SJAG_02509	B6JYU0	B6K2P3	Centrin.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.699
SJAG_01760	SJAG_03200	B6JYU0	B6K3L1	Centrin.	Spindle pole body docking protein Cut11.	0.424
SJAG_01760	SJAG_03835	B6JYU0	B6K566	Centrin.	Spindle pole body component.	0.434