STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJAG_02526RNA metabolism pathway protein Pet127. (533 aa)    
Predicted Functional Partners:
SJAG_02991
ATP-dependent RNA helicase Rpm2.
    
 
 0.780
SJAG_06586
3'-5' exonuclease for RNA 3' ss-tail.
   
 
 0.750
SJAG_03219
SCF ubiquitin ligase complex subunit Skp1; Belongs to the SKP1 family.
    
 0.741
SJAG_00796
Sister chromatid cohesion protein.
    
 0.655
SJAG_00349
Clr6 histone deacetylase complex subunit Alp13.
    
 0.654
SJAG_01685
Peroxin Pex32.
    
 0.634
SJAG_02993
Ribonuclease H70.
    
 0.623
SJAG_01722
Sterol binding ankyrin repeat protein; Belongs to the OSBP family.
   
 0.607
SJAG_02900
19S proteasome regulatory subunit Rpn11.
    
 0.607
SJAG_01090
Trp-like ion channel.
    
 0.604
Your Current Organism:
Schizosaccharomyces japonicus
NCBI taxonomy Id: 402676
Other names: S. japonicus yFS275, Schizosaccharomyces japonicus yFS275
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