STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJAG_03593Nucleoporin Nup40. (390 aa)    
Predicted Functional Partners:
SJAG_00093
Nuclear pore protein.
     
 0.999
SJAG_02757
Nucleoporin Nup157/170.
     
 0.999
SJAG_03182
Nucleoporin Nup186.
     
 0.999
SJAG_02210
Nucleoporin Nup44.
     
 0.757
SJAG_02274
Nucleoporin Nsp1.
     
 0.739
SJAG_01293
NUP37 family WD repeat protein.
     
 0.738
SJAG_01374
Nucleoporin Nup132.
    
 0.619
SJAG_04284
Nucleoporin Nup61.
     
 0.609
SJAG_01185
Nuclear pore protein.
     
 0.605
SJAG_03200
Spindle pole body docking protein Cut11.
    
 0.601
Your Current Organism:
Schizosaccharomyces japonicus
NCBI taxonomy Id: 402676
Other names: S. japonicus yFS275, Schizosaccharomyces japonicus yFS275
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.