STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJAG_03627Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (423 aa)    
Predicted Functional Partners:
SJAG_01532
Transcription factor prr1.
    
 0.999
SJAG_02472
Transcription factor Prr1.
    
 0.999
SJAG_01926
Set3 complex subunit Hif2.
   
 0.951
SJAG_02981
Clr6 histone deacetylase complex subunit Sds3.
    
 0.928
SJAG_00349
Clr6 histone deacetylase complex subunit Alp13.
    
 0.922
SJAG_04758
Clr6 histone deacetylase complex subunit Prw1.
   
 0.918
SJAG_03230
Chromatin modification-related protein.
    
 0.908
SJAG_03982
SHREC complex subunit Mit1.
   
 0.890
SJAG_03844
Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.
  
 
0.880
SJAG_04213
RSC complex subunit Sfh1.
   
 0.879
Your Current Organism:
Schizosaccharomyces japonicus
NCBI taxonomy Id: 402676
Other names: S. japonicus yFS275, Schizosaccharomyces japonicus yFS275
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.