STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJAG_03810Rab geranylgeranyltransferase alpha subunit. (345 aa)    
Predicted Functional Partners:
SJAG_04434
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.999
SJAG_01379
GTPase Ypt5.
    
 0.842
SJAG_02640
GTPase Ypt1.
    
 0.799
SJAG_03072
GTPase Ypt71.
    
 0.777
SJAG_03137
GTPase Ypt7.
    
 0.777
SJAG_00899
SNARE Ykt6; Belongs to the synaptobrevin family.
    
 
 0.770
SJAG_02737
MT organizer Mto1.
    
 0.751
SJAG_05030
GTPase Ryh1.
    
 0.750
SJAG_03915
GTPase Ypt3.
    
 0.704
SJAG_00428
Uncharacterized protein.
    
 0.692
Your Current Organism:
Schizosaccharomyces japonicus
NCBI taxonomy Id: 402676
Other names: S. japonicus yFS275, Schizosaccharomyces japonicus yFS275
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.