STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJAG_03939RNA-binding protein. (589 aa)    
Predicted Functional Partners:
SJAG_00456
Uncharacterized protein.
    
 0.900
SJAG_04601
Poly(A) binding protein Pab2.
    
 0.880
SJAG_02382
ATP-dependent RNA helicase DOB1.
   
 0.876
SJAG_02622
YTH family protein Mmi1.
    
 0.865
SJAG_04768
zf-C3H1 domain-containing protein.
   
 
 0.787
SJAG_02720
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
   
 
 0.711
SJAG_04118
Ski complex RNA helicase Ski2.
    
 
 0.668
SJAG_04360
Nuclear cap-binding complex large subunit.
   
 
 0.639
SJAG_16455
Uncharacterized protein.
   
 
 0.587
SJAG_01064
Nuclear cap-binding protein subunit 2.
   
  
 0.586
Your Current Organism:
Schizosaccharomyces japonicus
NCBI taxonomy Id: 402676
Other names: S. japonicus yFS275, Schizosaccharomyces japonicus yFS275
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