STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJAG_04230U5 snRNP-associated protein Prp28; Belongs to the DEAD box helicase family. (672 aa)    
Predicted Functional Partners:
SJAG_04497
U5 snRNP complex subunit Spp42.
   
 0.998
SJAG_00414
GTPase Cwf10.
   
 0.996
SJAG_02295
U5 snRNP complex subunit Brr2.
   
 0.996
SJAG_00643
U4/U6 X U5 tri-snRNP complex subunit Prp1.
   
 0.992
SJAG_05235
Splicing factor Spf38.
    
 0.990
SJAG_04222
Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.
    
 0.985
SJAG_02304
Small nuclear ribonucleoprotein Sm D2.
    
 0.981
SJAG_03469
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.981
SJAG_01870
Small nuclear ribonucleoprotein G.
    
 0.975
SJAG_02843
Sm snRNP core protein Smf1.
    
 0.974
Your Current Organism:
Schizosaccharomyces japonicus
NCBI taxonomy Id: 402676
Other names: S. japonicus yFS275, Schizosaccharomyces japonicus yFS275
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.