STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJAG_04283Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (386 aa)    
Predicted Functional Partners:
SJAG_02601
Elongation factor 1 alpha like protein.
   
 0.999
SJAG_00226
Ski complex interacting GTPase.
   
 
 0.965
SJAG_03658
Iron-sulfur protein.
  
 
 0.920
SJAG_05000
RACK1 Cpc2.
    
 
 0.908
SJAG_04814
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
 
 0.875
SJAG_01287
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 
 0.868
SJAG_01632
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
    
 
 0.863
SJAG_04476
40S ribosomal protein S20.
    
 
 0.859
SJAG_01696
Translation release factor class II eRF3.
   
 
 0.857
SJAG_03262
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
    
 
 0.855
Your Current Organism:
Schizosaccharomyces japonicus
NCBI taxonomy Id: 402676
Other names: S. japonicus yFS275, Schizosaccharomyces japonicus yFS275
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