STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJAG_04529U4/U6 X U5 tri-snRNP complex subunit Prp31. (497 aa)    
Predicted Functional Partners:
SJAG_00076
Microfibrillar-associated protein family protein.
   
 0.999
SJAG_00643
U4/U6 X U5 tri-snRNP complex subunit Prp1.
   
 0.999
SJAG_03410
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
    
 0.996
SJAG_04497
U5 snRNP complex subunit Spp42.
    
 0.994
SJAG_00531
U4/U6 X U5 tri-snRNP complex subunit Prp4 family protein.
   
 0.993
SJAG_01634
U4/U6 X U5 tri-snRNP complex subunit Prp3.
   
 0.993
SJAG_02295
U5 snRNP complex subunit Brr2.
    
 0.993
SJAG_04433
U4/U6 X U5 tri-snRNP complex subunit Snu66.
   
 0.993
LSM8
U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.991
SJAG_02843
Sm snRNP core protein Smf1.
   
 0.991
Your Current Organism:
Schizosaccharomyces japonicus
NCBI taxonomy Id: 402676
Other names: S. japonicus yFS275, Schizosaccharomyces japonicus yFS275
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