Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SJAG_00452 | SJAG_00615 | B6JVN7 | B6JW46 | Ubiquitin. | Ubiquitin-like protein modifier Ned8. | 0.861 |
SJAG_00452 | SJAG_00878 | B6JVN7 | B6JWV3 | Ubiquitin. | NEDD8 activating enzyme. | 0.881 |
SJAG_00452 | SJAG_00941 | B6JVN7 | B6JX15 | Ubiquitin. | Rad23 Rhp23. | 0.983 |
SJAG_00452 | SJAG_01018 | B6JVN7 | B6JX93 | Ubiquitin. | NEDD8-conjugating enzyme Ubc12; Belongs to the ubiquitin-conjugating enzyme family. | 0.876 |
SJAG_00452 | SJAG_01448 | B6JVN7 | B6JXY8 | Ubiquitin. | Boi family protein. | 0.964 |
SJAG_00452 | SJAG_01574 | B6JVN7 | B6JYB3 | Ubiquitin. | Homoaconitase, mitochondrial; Catalyzes the reversible hydration of cis-homoaconitate to (2R,3S)-homoisocitrate, a step in the alpha-aminoadipate pathway for lysine biosynthesis. | 0.513 |
SJAG_00452 | SJAG_01630 | B6JVN7 | B6JYG8 | Ubiquitin. | Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family. | 0.513 |
SJAG_00452 | SJAG_03289 | B6JVN7 | B6K3U8 | Ubiquitin. | rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. | 0.513 |
SJAG_00452 | SJAG_03588 | B6JVN7 | B6K4M6 | Ubiquitin. | Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family. | 0.513 |
SJAG_00452 | SJAG_05977 | B6JVN7 | T0S165 | Ubiquitin. | NEDD8 protease Nep1. | 0.720 |
SJAG_00615 | SJAG_00452 | B6JW46 | B6JVN7 | Ubiquitin-like protein modifier Ned8. | Ubiquitin. | 0.861 |
SJAG_00615 | SJAG_00878 | B6JW46 | B6JWV3 | Ubiquitin-like protein modifier Ned8. | NEDD8 activating enzyme. | 0.999 |
SJAG_00615 | SJAG_00941 | B6JW46 | B6JX15 | Ubiquitin-like protein modifier Ned8. | Rad23 Rhp23. | 0.550 |
SJAG_00615 | SJAG_01018 | B6JW46 | B6JX93 | Ubiquitin-like protein modifier Ned8. | NEDD8-conjugating enzyme Ubc12; Belongs to the ubiquitin-conjugating enzyme family. | 0.999 |
SJAG_00615 | SJAG_01448 | B6JW46 | B6JXY8 | Ubiquitin-like protein modifier Ned8. | Boi family protein. | 0.433 |
SJAG_00615 | SJAG_01574 | B6JW46 | B6JYB3 | Ubiquitin-like protein modifier Ned8. | Homoaconitase, mitochondrial; Catalyzes the reversible hydration of cis-homoaconitate to (2R,3S)-homoisocitrate, a step in the alpha-aminoadipate pathway for lysine biosynthesis. | 0.513 |
SJAG_00615 | SJAG_01630 | B6JW46 | B6JYG8 | Ubiquitin-like protein modifier Ned8. | Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family. | 0.513 |
SJAG_00615 | SJAG_03289 | B6JW46 | B6K3U8 | Ubiquitin-like protein modifier Ned8. | rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. | 0.513 |
SJAG_00615 | SJAG_03588 | B6JW46 | B6K4M6 | Ubiquitin-like protein modifier Ned8. | Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family. | 0.513 |
SJAG_00615 | SJAG_05977 | B6JW46 | T0S165 | Ubiquitin-like protein modifier Ned8. | NEDD8 protease Nep1. | 0.943 |
page 1 of 5