STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lcl3Probable endonuclease lcl3. (233 aa)    
Predicted Functional Partners:
SJAG_05002
Fungal protein.
   
 0.884
SJAG_02056
Palmitoyl protein thioesterase-dolichol pyrophosphate phosphatase fusion 1.
    
 0.800
SJAG_01384
Arp2/3 complex 34 kDa subunit; Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.
 
      0.714
SJAG_04684
ER chaperone SHR3 ue Psh3.
  
 0.658
SJAG_00674
Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.631
SJAG_03293
Succinate-semialdehyde dehydrogenase.
   
 0.631
SJAG_00395
Homoserine O-acetyltransferase.
   
 0.602
SJAG_00482
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.602
SJAG_01795
Hydrolase.
   
 0.602
SJAG_01834
Nucleoporin Pom152.
   
 0.602
Your Current Organism:
Schizosaccharomyces japonicus
NCBI taxonomy Id: 402676
Other names: S. japonicus yFS275, Schizosaccharomyces japonicus yFS275
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.