STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ39287.1Gliding motility-associated C-terminal domain-containing protein; Partial gene; manually curated. (61 aa)    
Predicted Functional Partners:
SEI47981.1
Hypothetical protein.
  
 
  0.850
SEI66597.1
CarboxypepD_reg-like domain-containing protein.
  
 
   0.788
SEI77420.1
Putative DNA-binding domain-containing protein.
  
     0.770
SEI46032.1
Protein of unknown function.
  
     0.769
SEJ24606.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.764
SEJ31110.1
Hypothetical protein.
  
     0.763
SEI39406.1
Thioredoxin-like.
  
     0.760
SEI80059.1
Hypothetical protein.
  
     0.759
SEJ33460.1
Hypothetical protein.
  
     0.756
SEI46018.1
Protein of unknown function.
  
     0.746
Your Current Organism:
Flavobacterium terrigena
NCBI taxonomy Id: 402734
Other names: DSM 17934, F. terrigena, Flavobacterium terrigena Yoon et al. 2007 emend. Fujii et al. 2014, Flavobacterium terrigena Yoon et al. 2007 emend. Hahnke et al. 2016, KCTC 12761, strain DS-20
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