Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEI39277.1 | SEI39290.1 | SAMN05660918_0307 | SAMN05660918_0308 | Hypothetical protein. | Dihaem cytochrome c. | 0.572 |
SEI39277.1 | SEI39310.1 | SAMN05660918_0307 | SAMN05660918_0309 | Hypothetical protein. | FKBP-type peptidyl-prolyl cis-trans isomerase. | 0.407 |
SEI39290.1 | SEI39277.1 | SAMN05660918_0308 | SAMN05660918_0307 | Dihaem cytochrome c. | Hypothetical protein. | 0.572 |
SEI39290.1 | SEI39310.1 | SAMN05660918_0308 | SAMN05660918_0309 | Dihaem cytochrome c. | FKBP-type peptidyl-prolyl cis-trans isomerase. | 0.546 |
SEI39290.1 | SEI90293.1 | SAMN05660918_0308 | SAMN05660918_1870 | Dihaem cytochrome c. | Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family. | 0.780 |
SEI39290.1 | SEI93757.1 | SAMN05660918_0308 | SAMN05660918_1977 | Dihaem cytochrome c. | Copper-resistance protein, CopA family. | 0.761 |
SEI39290.1 | SEI99525.1 | SAMN05660918_0308 | SAMN05660918_2087 | Dihaem cytochrome c. | Cytochrome c oxidase subunit 1; Belongs to the heme-copper respiratory oxidase family. | 0.434 |
SEI39290.1 | SEI99551.1 | SAMN05660918_0308 | SAMN05660918_2088 | Dihaem cytochrome c. | Cytochrome c oxidase subunit 2. | 0.434 |
SEI39290.1 | SEI99710.1 | SAMN05660918_0308 | SAMN05660918_2093 | Dihaem cytochrome c. | Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor. | 0.434 |
SEI39290.1 | SEI99759.1 | SAMN05660918_0308 | SAMN05660918_2094 | Dihaem cytochrome c. | Cytochrome c7. | 0.434 |
SEI39290.1 | SEJ30626.1 | SAMN05660918_0308 | SAMN05660918_2921 | Dihaem cytochrome c. | 4Fe-4S dicluster domain-containing protein. | 0.527 |
SEI39290.1 | nuoI | SAMN05660918_0308 | SAMN05660918_1420 | Dihaem cytochrome c. | NADH dehydrogenase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.527 |
SEI39310.1 | SEI39277.1 | SAMN05660918_0309 | SAMN05660918_0307 | FKBP-type peptidyl-prolyl cis-trans isomerase. | Hypothetical protein. | 0.407 |
SEI39310.1 | SEI39290.1 | SAMN05660918_0309 | SAMN05660918_0308 | FKBP-type peptidyl-prolyl cis-trans isomerase. | Dihaem cytochrome c. | 0.546 |
SEI39310.1 | SEJ30626.1 | SAMN05660918_0309 | SAMN05660918_2921 | FKBP-type peptidyl-prolyl cis-trans isomerase. | 4Fe-4S dicluster domain-containing protein. | 0.541 |
SEI39310.1 | nuoI | SAMN05660918_0309 | SAMN05660918_1420 | FKBP-type peptidyl-prolyl cis-trans isomerase. | NADH dehydrogenase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.541 |
SEI90293.1 | SEI39290.1 | SAMN05660918_1870 | SAMN05660918_0308 | Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family. | Dihaem cytochrome c. | 0.780 |
SEI90293.1 | SEI93757.1 | SAMN05660918_1870 | SAMN05660918_1977 | Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family. | Copper-resistance protein, CopA family. | 0.479 |
SEI90293.1 | SEI99525.1 | SAMN05660918_1870 | SAMN05660918_2087 | Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family. | Cytochrome c oxidase subunit 1; Belongs to the heme-copper respiratory oxidase family. | 0.944 |
SEI90293.1 | SEI99551.1 | SAMN05660918_1870 | SAMN05660918_2088 | Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family. | Cytochrome c oxidase subunit 2. | 0.941 |
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