STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI42379.1Membrane protein. (295 aa)    
Predicted Functional Partners:
SEI42395.1
Hypothetical protein.
       0.773
SEI42362.1
Low affinity Fe/Cu permease.
 
     0.717
SEI42344.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
    0.628
SEI42322.1
Glycine/D-amino acid oxidase.
 
     0.529
SEI42428.1
Family of unknown function.
 
     0.431
SEI39675.1
Uncharacterized conserved protein YjbJ, UPF0337 family; Belongs to the UPF0337 (CsbD) family.
 
    0.423
SEI42412.1
Hypothetical protein.
       0.412
SEI42450.1
Outer membrane protein assembly factor BamA.
 
     0.411
Your Current Organism:
Flavobacterium terrigena
NCBI taxonomy Id: 402734
Other names: DSM 17934, F. terrigena, Flavobacterium terrigena Yoon et al. 2007 emend. Fujii et al. 2014, Flavobacterium terrigena Yoon et al. 2007 emend. Hahnke et al. 2016, KCTC 12761, strain DS-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.