STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI43923.1Regulatory protein, luxR family. (251 aa)    
Predicted Functional Partners:
SEI40066.1
PAS domain S-box-containing protein.
   
 0.958
SEI72152.1
PAS domain S-box-containing protein.
  
 0.904
SEI57284.1
Signal transduction histidine kinase.
   
 0.814
SEI87647.1
Signal transduction histidine kinase.
   
 0.814
SEI40370.1
PAS domain S-box-containing protein.
   
 0.810
SEI46719.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.769
SEI63446.1
Histidine kinase.
  
  0.768
SEJ02898.1
Hypothetical protein.
  
  0.754
SEI60050.1
Signal transduction histidine kinase.
  
 0.723
SEJ35369.1
His Kinase A (phospho-acceptor) domain-containing protein.
   
 0.686
Your Current Organism:
Flavobacterium terrigena
NCBI taxonomy Id: 402734
Other names: DSM 17934, F. terrigena, Flavobacterium terrigena Yoon et al. 2007 emend. Fujii et al. 2014, Flavobacterium terrigena Yoon et al. 2007 emend. Hahnke et al. 2016, KCTC 12761, strain DS-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.