STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI44856.1Hypothetical protein. (207 aa)    
Predicted Functional Partners:
SEI94442.1
Outer membrane receptor for ferrienterochelin and colicins.
 
     0.809
SEI44875.1
Hypothetical protein.
       0.645
SEI44894.1
2TM domain-containing protein.
       0.645
SEI44915.1
2TM domain-containing protein.
       0.614
SEI44929.1
2TM domain-containing protein.
       0.490
SEI44953.1
Two component transcriptional regulator, LytTR family.
       0.477
SEI44836.1
Heme-degrading monooxygenase HmoA.
       0.475
SEJ21012.1
Hypothetical protein.
  
     0.475
SEJ30233.1
CarboxypepD_reg-like domain-containing protein.
  
     0.431
SEI57010.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.425
Your Current Organism:
Flavobacterium terrigena
NCBI taxonomy Id: 402734
Other names: DSM 17934, F. terrigena, Flavobacterium terrigena Yoon et al. 2007 emend. Fujii et al. 2014, Flavobacterium terrigena Yoon et al. 2007 emend. Hahnke et al. 2016, KCTC 12761, strain DS-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.