STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI45275.1Lipopolysaccharide kinase (Kdo/WaaP) family protein. (241 aa)    
Predicted Functional Partners:
SEI45338.1
Protein of unknown function.
  
 
  0.787
SEI45359.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.784
SEI45293.1
Protein of unknown function.
       0.779
SEI45376.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.779
SEI45314.1
Dolichol-phosphate mannosyltransferase.
       0.776
SEJ01761.1
Hypothetical protein.
  
     0.709
SEJ19313.1
Exosortase F-associated protein.
  
     0.703
SEI61486.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.702
SEJ19347.1
Exosortase family protein XrtF.
  
     0.694
SEI79962.1
phenylacetate-CoA ligase.
  
  
  0.669
Your Current Organism:
Flavobacterium terrigena
NCBI taxonomy Id: 402734
Other names: DSM 17934, F. terrigena, Flavobacterium terrigena Yoon et al. 2007 emend. Fujii et al. 2014, Flavobacterium terrigena Yoon et al. 2007 emend. Hahnke et al. 2016, KCTC 12761, strain DS-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.