STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI57010.1Outer membrane protein beta-barrel domain-containing protein. (196 aa)    
Predicted Functional Partners:
SEI43435.1
WD40-like Beta Propeller Repeat.
    
 
 0.547
rpmC
Large subunit ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 
   0.504
rpsU
Small subunit ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
 
   0.497
SEI77777.1
Periplasmic chaperone for outer membrane proteins Skp.
    
   0.457
SEJ24695.1
Periplasmic chaperone for outer membrane proteins Skp.
    
   0.457
SEJ24714.1
Outer membrane protein (OmpH-like).
    
   0.457
secA
Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
    
   0.453
SEJ36441.1
Outer membrane protein OmpA.
    
 
 0.446
SEJ36814.1
Outer membrane protein OmpA; Partial gene; manually curated.
    
 
 0.446
SEJ38992.1
OmpA family protein; Partial gene; manually curated.
    
 
 0.446
Your Current Organism:
Flavobacterium terrigena
NCBI taxonomy Id: 402734
Other names: DSM 17934, F. terrigena, Flavobacterium terrigena Yoon et al. 2007 emend. Fujii et al. 2014, Flavobacterium terrigena Yoon et al. 2007 emend. Hahnke et al. 2016, KCTC 12761, strain DS-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.