STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI77459.1Por secretion system C-terminal sorting domain-containing protein. (1124 aa)    
Predicted Functional Partners:
SEI77480.1
Putative endopeptidase.
       0.545
SEI77439.1
Protein SCO1/2.
       0.541
SEI69626.1
Von Willebrand factor type A domain-containing protein.
  
     0.529
SEI99834.1
Hemoglobin/transferrin/lactoferrin receptor protein.
  
     0.489
SEI41452.1
Protein of unknown function (DU1801).
  
     0.483
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
       0.479
SEI68380.1
Uncharacterized conserved protein YbaP, TraB family.
  
     0.462
SEJ12092.1
Hypothetical protein.
  
     0.442
SEI46474.1
Hypothetical protein.
  
     0.411
SEJ20615.1
Carbohydrate family 9 binding domain-like.
  
     0.406
Your Current Organism:
Flavobacterium terrigena
NCBI taxonomy Id: 402734
Other names: DSM 17934, F. terrigena, Flavobacterium terrigena Yoon et al. 2007 emend. Fujii et al. 2014, Flavobacterium terrigena Yoon et al. 2007 emend. Hahnke et al. 2016, KCTC 12761, strain DS-20
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.