STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI94384.1pRiA4b ORF-3-like protein. (183 aa)    
Predicted Functional Partners:
SEJ34072.1
Protein of unknown function.
  
     0.770
SEI94359.1
Hypothetical protein.
 
     0.749
SEI64515.1
Protein involved in gliding motility GldN.
  
     0.742
SEJ02487.1
Protein of unknown function.
  
     0.735
SEI56756.1
Hypothetical protein.
  
     0.732
SEI64487.1
Protein involved in gliding motility GldM.
  
     0.727
SEI38049.1
Protein of unknown function.
  
     0.719
SEI38163.1
Hypothetical protein.
  
     0.708
SEI56265.1
Outer membrane protein transport protein (OMPP1/FadL/TodX).
  
     0.680
SEI47377.1
Hypothetical protein.
  
     0.674
Your Current Organism:
Flavobacterium terrigena
NCBI taxonomy Id: 402734
Other names: DSM 17934, F. terrigena, Flavobacterium terrigena Yoon et al. 2007 emend. Fujii et al. 2014, Flavobacterium terrigena Yoon et al. 2007 emend. Hahnke et al. 2016, KCTC 12761, strain DS-20
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.