STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ22620.1Branched-chain amino acid transport system substrate-binding protein. (383 aa)    
Predicted Functional Partners:
SEJ22637.1
methionyl-tRNA formyltransferase.
       0.779
SEJ22595.1
Microcystin-dependent protein.
 
     0.736
SEJ22567.1
Microcystin-dependent protein.
 
     0.696
SEJ22658.1
SprB repeat-containing protein; Partial gene; manually curated.
 
     0.692
SEI43843.1
Hypothetical protein.
  
     0.557
SEI88035.1
Large subunit ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.
  
    0.521
SEI72152.1
PAS domain S-box-containing protein.
   
 0.497
SEI83145.1
Uncharacterized conserved protein YbcV, DUF1398 family.
  
     0.481
SEI43851.1
Protein of unknown function.
  
     0.472
SEI93619.1
Copper chaperone CopZ.
  
     0.443
Your Current Organism:
Flavobacterium terrigena
NCBI taxonomy Id: 402734
Other names: DSM 17934, F. terrigena, Flavobacterium terrigena Yoon et al. 2007 emend. Fujii et al. 2014, Flavobacterium terrigena Yoon et al. 2007 emend. Hahnke et al. 2016, KCTC 12761, strain DS-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.