STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ29625.1Peptidase family M23. (365 aa)    
Predicted Functional Partners:
SEJ29605.1
Hypothetical protein.
       0.773
SEI62011.1
Peptidase family M23.
  
     0.664
SEI79020.1
Peptidase family M23.
  
     0.570
SEI81096.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
  
     0.550
SEJ29586.1
Hypothetical protein.
       0.541
SEI95532.1
Cyanophycin synthetase; Belongs to the MurCDEF family.
    
 0.516
SEJ29649.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
       0.455
SEJ29672.1
DNA-binding transcriptional regulator, ArsR family.
       0.455
SEJ29692.1
Ribosomal protein S18 acetylase RimI.
       0.423
SEJ29713.1
Hypothetical protein.
       0.423
Your Current Organism:
Flavobacterium terrigena
NCBI taxonomy Id: 402734
Other names: DSM 17934, F. terrigena, Flavobacterium terrigena Yoon et al. 2007 emend. Fujii et al. 2014, Flavobacterium terrigena Yoon et al. 2007 emend. Hahnke et al. 2016, KCTC 12761, strain DS-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.