STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABO34609.1KEGG: mmp:MMP1300 hypothetical protein. (177 aa)    
Predicted Functional Partners:
ABO34608.1
PFAM: formate/nitrite transporter; KEGG: mmp:MMP1301 formate transporter.
  
    0.998
ABO34610.1
PFAM: carbonic anhydrase; KEGG: mmp:MMP1299 carbonic anhydrase.
  
    0.995
ABO34607.1
KEGG: mmp:MMP1302 hypothetical protein.
  
    0.986
ABO34611.1
KEGG: mmp:MMP1298 formate dehydrogenase alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region.
  
    0.975
ABO34612.1
Formate dehydrogenase, beta subunit (F420); PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: mmp:MMP1297 formate dehydrogenase beta subunit.
  
    0.974
Your Current Organism:
Methanococcus maripaludis C5
NCBI taxonomy Id: 402880
Other names: M. maripaludis C5, Methanococcus maripaludis str. C5, Methanococcus maripaludis strain C5
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