STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABO34759.1ATP dependent helicase, Lhr family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases-like; KEGG: mmp:MMP1141 Lhr-like RNA helicase. (874 aa)    
Predicted Functional Partners:
ABO34758.1
PFAM: metallophosphoesterase; KEGG: mmp:MMP1142 metallo-phosphoesterase:serine/threonine-specific protein phosphatase.
 
    0.966
lig
DNA ligase I, ATP-dependent Dnl1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
 
    0.749
ABO35480.1
PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: mmp:MMP0457 probable ATP dependent RNA helicase; Belongs to the DEAD box helicase family.
     
 0.676
queE
Radical SAM domain protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.
     
 0.673
ABO34772.1
PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: mmp:MMP1127 RNA binding S1.
      
 0.664
ABO35898.1
PFAM: deoxyribonuclease/rho motif-related TRAM; KEGG: mmp:MMP0076 hypothetical protein.
      
 0.664
ABO35899.1
PFAM: Abortive infection protein; KEGG: mmp:MMP0075 hypothetical protein.
      
 0.664
ABO35996.1
PFAM: RNA binding S1 domain protein; translation initiation factor 2, alpha subunit; KEGG: mmp:MMP1707 translation initiation factor aIF-2, subunit alpha.
      
 0.663
radB
DNA repair and recombination protein RadB; Involved in DNA repair and in homologous recombination. May regulate the cleavage reactions of the branch-structured DNA. Has a very weak ATPase activity that is not stimulated by DNA. Binds DNA but does not promote DNA strands exchange.
  
 
 0.654
radA
DNA repair and recombination protein RadA; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules.
  
 
 0.642
Your Current Organism:
Methanococcus maripaludis C5
NCBI taxonomy Id: 402880
Other names: M. maripaludis C5, Methanococcus maripaludis str. C5, Methanococcus maripaludis strain C5
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