STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABO35806.1TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: mmp:MMP0166 MatE family member (drug/sodium antiporters). (460 aa)    
Predicted Functional Partners:
ABO35805.1
KEGG: mmp:MMP0167 ABC transporter ATP binding protein family member; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 0.990
ABO35807.1
TIGRFAM: daunorubicin resistance ABC transporter, inner membrane subunit B; PFAM: ABC-2 type transporter; KEGG: mmp:MMP0165 ABC transporter, family 2.
  
  
 0.931
ABO35804.1
PFAM: transcriptional regulator PadR family protein; KEGG: mmp:MMP0168 transcriptional regulator PadR-like family.
 
    0.874
ABO35823.1
PFAM: putative RNA methylase; THUMP domain protein; KEGG: mmp:MMP0149 putative methyltransferase.
 
    0.814
gap
KEGG: mmp:MMP0325 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type II; PFAM: glyceraldehyde 3-phosphate dehydrogenase; dihydrodipicolinate reductase.
  
  
 0.664
tbp
TATA-box binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
   
  
 0.620
tbp-2
TATA binding protein of transcription factor TFIID; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
   
  
 0.620
ABO35801.1
PFAM: conserved hypothetical protein 245; KEGG: mmp:MMP0171 putative ABC transport system permease protein.
  
  
 0.603
ABO35803.1
PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; KEGG: mmp:MMP0169 hypothetical protein.
       0.578
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
     
 0.568
Your Current Organism:
Methanococcus maripaludis C5
NCBI taxonomy Id: 402880
Other names: M. maripaludis C5, Methanococcus maripaludis str. C5, Methanococcus maripaludis strain C5
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