STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_0072PFAM: type II secretion system protein E; KEGG: swi:Swit_3512 type II secretion system protein E. (408 aa)    
Predicted Functional Partners:
Plav_0070
PFAM: type II and III secretion system protein; transport-associated; KEGG: swi:Swit_3514 type II and III secretion system protein; Belongs to the bacterial secretin family.
  
 0.966
Plav_0069
PFAM: SAF domain protein; KEGG: bcn:Bcen_1040 Flp pilus assembly CpaB.
 
  
 0.960
Plav_0071
PFAM: response regulator receiver; KEGG: rme:Rmet_3655 response regulator receiver domain protein (CheY-like).
 
  
 0.960
Plav_0073
PFAM: type II secretion system protein; KEGG: swi:Swit_3511 type II secretion system protein.
 
  
 0.942
Plav_0074
PFAM: type II secretion system protein; KEGG: swi:Swit_3510 type II secretion system protein.
 
  
 0.940
Plav_0237
PFAM: type II secretion system protein; KEGG: rpc:RPC_3717 type II secretion system protein.
 
  
 0.869
Plav_0238
PFAM: type II secretion system protein; KEGG: mmr:Mmar10_0424 type II secretion system protein.
 
  
 0.863
Plav_0233
PFAM: type II and III secretion system protein; transport-associated; KEGG: mmr:Mmar10_0419 type II and III secretion system protein; Belongs to the bacterial secretin family.
  
 0.851
Plav_0232
PFAM: SAF domain protein; KEGG: rpd:RPD_3519 Flp pilus assembly CpaB.
 
  
 0.831
Plav_0075
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: bam:Bamb_1408 tetratricopeptide TPR_2 repeat protein.
 
  
 0.766
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.