STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_0083KEGG: pmy:Pmen_3653 metal-dependent hydrolase-like protein. (282 aa)    
Predicted Functional Partners:
Plav_0084
PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pau:PA14_53520 transcriptional regulator OruR.
 
     0.774
Plav_0082
PFAM: cytochrome P450; KEGG: mxa:MXAN_2304 cytochrome P450 family protein.
       0.705
Plav_0391
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pmy:Pmen_1266 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.626
Plav_0853
KEGG: bja:bll5942 flavin-binding family monooxygenase.
 
     0.492
Plav_2784
KEGG: mmr:Mmar10_1416 hypothetical protein.
  
     0.475
Plav_0081
Hypothetical protein.
       0.458
Plav_0085
KEGG: bxe:Bxe_A2804 putative membrane protein, glycine-rich.
       0.445
Plav_1138
Limonene-12-epoxide hydrolase; PFAM: protein of unknown function DUF1486; Limonene-12-epoxide hydrolase; KEGG: nfa:nfa41920 hypothetical protein.
  
     0.435
Plav_2500
KEGG: hne:HNE_2926 hypothetical protein.
  
     0.432
Plav_3335
PFAM: beta-lactamase domain protein; KEGG: nar:Saro_1798 beta-lactamase-like.
  
     0.420
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.