STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_0182PFAM: periplasmic binding protein; KEGG: gvi:gll0580 hemin-binding periplasmic protein. (296 aa)    
Predicted Functional Partners:
Plav_0183
PFAM: Haemin-degrading family protein; KEGG: mxa:MXAN_1318 hemin transport protein HemS.
  
 0.997
Plav_0181
PFAM: transport system permease protein; KEGG: jan:Jann_2135 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.995
Plav_0510
PFAM: transport system permease protein; KEGG: bms:BR1345 iron compound ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.979
hmuV
ABC transporter related; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
 
 0.977
Plav_0185
TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ana:alr2153 outer membrane heme receptor.
  
 0.893
Plav_0511
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swi:Swit_0257 ABC transporter related.
 
 
 0.848
Plav_0184
TIGRFAM: TonB family protein; KEGG: psb:Psyr_4480 TonB, C-terminal.
  
  
 0.740
Plav_3145
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xac:XAC0823 outer membrane hemin receptor.
 
  
 0.606
Plav_0186
Hypothetical protein.
     
 0.558
Plav_2890
PFAM: MotA/TolQ/ExbB proton channel; KEGG: aeh:Mlg_1848 MotA/TolQ/ExbB proton channel.
 
  
 0.455
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.