STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_0210PFAM: luciferase family protein; KEGG: bja:bll7033 LuxA-like protein. (415 aa)    
Predicted Functional Partners:
Plav_1795
PFAM: amidohydrolase 2; KEGG: swi:Swit_1767 amidohydrolase 2.
 
   
 0.649
Plav_2800
PFAM: NHL repeat containing protein; KEGG: rpa:RPA4432 NHL repeat.
  
     0.557
Plav_0211
PFAM: regulatory protein MarR; KEGG: ade:Adeh_2919 transcriptional regulator, MarR family.
       0.550
Plav_2632
KEGG: rpe:RPE_2309 hypothetical protein.
  
     0.508
Plav_0891
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_C0801 ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit.
 
  
 0.496
Plav_0212
PFAM: Phytanoyl-CoA dioxygenase; KEGG: rpa:RPA0441 hypothetical protein.
       0.493
Plav_0893
PFAM: NMT1/THI5 like domain protein; KEGG: hypothetical protein; K02051 sulfonate/nitrate/taurine transport system substrate-binding protein.
 
  
 0.493
Plav_1373
PFAM: aldo/keto reductase; KEGG: ath:AT4G33670 aldo-keto reductase/ oxidoreductase.
 
   
 0.491
Plav_3206
KEGG: bba:Bd1177 hypothetical protein.
  
     0.485
Plav_2592
PFAM: regulatory protein TetR; KEGG: mbb:BCG_0369c hypothetical protein.
  
   
 0.471
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.