STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_0234TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; KEGG: ret:RHE_CH00206 pilus assembly protein. (234 aa)    
Predicted Functional Partners:
Plav_0235
KEGG: mmr:Mmar10_0421 response regulator receiver protein.
 
     0.955
Plav_0232
PFAM: SAF domain protein; KEGG: rpd:RPD_3519 Flp pilus assembly CpaB.
 
     0.927
Plav_0233
PFAM: type II and III secretion system protein; transport-associated; KEGG: mmr:Mmar10_0419 type II and III secretion system protein; Belongs to the bacterial secretin family.
 
   
 0.927
Plav_0231
PFAM: peptidase A24A prepilin type IV; KEGG: rpa:RPA3676 putative type IV prepilin peptidase, cpaA; Belongs to the peptidase A24 family.
 
   
 0.924
Plav_0238
PFAM: type II secretion system protein; KEGG: mmr:Mmar10_0424 type II secretion system protein.
 
     0.896
Plav_0237
PFAM: type II secretion system protein; KEGG: rpc:RPC_3717 type II secretion system protein.
 
     0.894
Plav_0236
PFAM: type II secretion system protein E; KEGG: rpb:RPB_1781 type II secretion system protein E.
 
   
 0.839
Plav_0230
PFAM: Flp/Fap pilin component; KEGG: bja:bsl7141 components of type IV pilus pilin subunit.
 
     0.787
Plav_0228
KEGG: bja:blr1444 hypothetical protein.
 
   
 0.785
Plav_0225
PFAM: TadE family protein; KEGG: hne:HNE_3020 Flp/Fap pilin component.
 
     0.783
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.