STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_0317KEGG: eba:ebA2442 hypothetical protein. (162 aa)    
Predicted Functional Partners:
Plav_0318
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: gur:Gura_2212 UBA/ThiF-type NAD/FAD binding protein.
       0.786
Plav_3289
TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: thiamin biosynthesis ThiS; K03154 thiamine biosynthesis ThiS.
  
 
 0.777
Plav_2273
PFAM: molybdopterin biosynthesis MoaE protein; KEGG: mlo:mlr7915 molybdopterin converting factor, subunit 2.
  
 0.758
Plav_0319
KEGG: rme:Rmet_3041 hypothetical protein.
       0.748
thiG
Thiazole biosynthesis family protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
  
  
 0.696
Plav_2274
TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: bbt:BBta_1725 molybdenum cofactor biosynthesis protein D.
  
 
 0.660
Plav_3263
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mag:amb3029 cysteine sulfinate desulfinase/cysteine desulfurase and related enzyme.
   
 0.574
thiC
Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.
  
  
 0.549
cysC
Sulfate adenylyltransferase, large subunit; Catalyzes the synthesis of activated sulfate. Belongs to the APS kinase family.
  
 
  0.522
Plav_1829
KEGG: rpe:RPE_2466 hypothetical protein.
  
 
 0.514
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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