STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_0347PFAM: copper resistance B precursor; KEGG: ppf:Pput_0013 copper resistance B precursor. (236 aa)    
Predicted Functional Partners:
Plav_0346
TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: maq:Maqu_0126 copper-resistance protein, CopA family.
  
 0.997
Plav_0348
PFAM: blue (type 1) copper domain protein; KEGG: pfo:Pfl_3854 uncharacterized copper-binding protein.
  
  
 0.922
Plav_1009
TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase type 2; KEGG: pna:Pnap_1326 nitrite reductase, copper-containing; Belongs to the multicopper oxidase family.
  
  
 0.842
Plav_0345
Hypothetical protein.
       0.581
Plav_0350
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: mes:Meso_3876 heavy metal translocating P-type ATPase.
 
   
 0.566
Plav_0349
KEGG: mmr:Mmar10_0207 hypothetical protein.
       0.419
Plav_0352
KEGG: rfr:Rfer_0425 hypothetical protein.
       0.410
Plav_0351
PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: mes:Meso_3879 beta-lactamase-like.
       0.405
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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