STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysSTIGRFAM: lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase class 1c; KEGG: nwi:Nwi_0151 lysyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (539 aa)    
Predicted Functional Partners:
Plav_2090
PFAM: protein of unknown function DUF1013; KEGG: bra:BRADO6589 hypothetical protein.
  
    0.771
Plav_2446
PFAM: protein of unknown function DUF1321; KEGG: bbt:BBta_6105 hypothetical protein.
  
     0.632
Plav_0434
KEGG: mmr:Mmar10_0515 hypothetical protein.
       0.597
rpsD
RNA-binding S4 domain protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
    0.588
Plav_0431
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xcv:XCV0528 two-component system sensor protein.
       0.564
Plav_0433
KEGG: ppr:PBPRA1525 hypothetical protein.
       0.563
Plav_0430
SMART: helicase c2; KEGG: mag:amb3608 Rad3-related DNA helicase.
       0.560
nadK
NAD(+) kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
  
     0.527
Plav_0429
KEGG: ret:RHE_CH00534 hypothetical protein.
       0.518
Plav_3475
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
 
      0.498
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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