STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_0450PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hne:HNE_0595 oxidoreductase, short chain dehydrogenase/reductase family protein. (296 aa)    
Predicted Functional Partners:
Plav_0602
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: psp:PSPPH_2776 3-oxoacyl-[acyl-carrier protein] reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
 0.613
Plav_2225
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hne:HNE_3099 oxidoreductase, short chain dehydrogenase/reductase family.
  
     0.587
Plav_3360
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: mag:amb2105 S-malonyltransferase.
  
 
 0.505
Plav_1118
KEGG: bba:Bd3071 regulatory protein.
  
 
 0.469
Plav_0015
PFAM: Ankyrin; KEGG: sru:SRU_2404 hypothetical protein.
   
 0.442
Plav_0360
Steryl-sulfatase; PFAM: sulfatase; KEGG: hne:HNE_1667 sulfatase family protein.
   
 
 0.429
Plav_1131
PFAM: sulfatase; KEGG: sulfatase family protein.
   
 
 0.429
Plav_2014
PFAM: sulfatase; KEGG: hne:HNE_1668 sulfatase family protein.
   
 
 0.429
Plav_2519
PFAM: sulfatase; KEGG: mlo:mlr3684 phosphonate monoester hydrolase.
   
 
 0.429
Plav_2621
PFAM: sulfatase; KEGG: cno:NT01CX_0300 probable sulfatase.
   
 
 0.429
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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