STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_0516PFAM: YhhN family protein; KEGG: mlo:mll3549 hypothetical protein. (230 aa)    
Predicted Functional Partners:
Plav_0515
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: bba:Bd1632 23S rRNA methyltransferase.
       0.530
Plav_2097
PFAM: Arylesterase; KEGG: lic:LIC10347 paraoxonase.
  
     0.521
Plav_0269
PFAM: peptidase U34 dipeptidase; KEGG: nca:Noca_0390 peptidase U34, dipeptidase.
  
     0.460
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.