STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_0631PFAM: peptidase U62 modulator of DNA gyrase; KEGG: nha:Nham_3182 peptidase U62, modulator of DNA gyrase. (468 aa)    
Predicted Functional Partners:
Plav_0666
PFAM: peptidase U62 modulator of DNA gyrase; KEGG: mes:Meso_0739 peptidase U62, modulator of DNA gyrase.
 
 
0.932
Plav_0632
KEGG: hne:HNE_1363 hypothetical protein.
 
     0.819
Plav_0630
PFAM: inositol monophosphatase; KEGG: inositol monophosphatase family protein.
       0.792
Plav_0629
KEGG: bra:BRADO6098 hypothetical protein.
       0.633
Plav_0628
PFAM: TspO/MBR family protein; KEGG: acr:Acry_0012 TspO and MBR like protein.
       0.563
Plav_0633
PFAM: Appr-1-p processing domain protein; KEGG: pde:Pden_3638 Appr-1-p processing domain protein.
       0.541
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
  
    0.482
Plav_0626
PFAM: protein of unknown function DUF374; KEGG: mag:amb4091 hypothetical protein.
       0.474
Plav_0625
Three-deoxy-D-manno-octulosonic-acid transferase domain protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
       0.463
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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