STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_0763PFAM: regulatory protein MarR; KEGG: mva:Mvan_6049 transcriptional regulator, MarR family. (156 aa)    
Predicted Functional Partners:
Plav_0764
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: 2-deoxy-D-gluconate 3-dehydrogenase.
       0.768
Plav_2592
PFAM: regulatory protein TetR; KEGG: mbb:BCG_0369c hypothetical protein.
  
   
 0.701
Plav_0282
PFAM: regulatory protein MarR; KEGG: sal:Sala_1768 transcriptional regulator, MarR family.
  
     0.694
Plav_1798
PFAM: regulatory protein IclR; KEGG: bpe:BP0674 probable transcriptional regulator.
  
  
 0.633
Plav_1118
KEGG: bba:Bd3071 regulatory protein.
  
  
 0.628
Plav_0762
L-lactate dehydrogenase (cytochrome); PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: swi:Swit_4638 FMN-dependent alpha-hydroxy acid dehydrogenase.
       0.560
Plav_0433
KEGG: ppr:PBPRA1525 hypothetical protein.
  
     0.559
Plav_1795
PFAM: amidohydrolase 2; KEGG: swi:Swit_1767 amidohydrolase 2.
 
     0.550
Plav_0765
Hypothetical protein.
       0.549
Plav_1778
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: eli:ELI_14950 regulatory protein GntR, HTH.
  
    0.531
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.