STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_0807PFAM: nuclear export factor GLE1; KEGG: atc:AGR_C_2707 hypothetical protein. (178 aa)    
Predicted Functional Partners:
Plav_1360
PFAM: protein of unknown function DUF461; KEGG: har:HEAR2923 Conserved hypothetical protein. putative conserved domain.
      0.916
Plav_0808
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rme:Rmet_4565 TonB-dependent receptor.
     0.802
Plav_0806
PFAM: aminotransferase class V; Pyridoxal-dependent decarboxylase; KEGG: eli:ELI_00260 putative sphingosine-1-phosphate lyase.
       0.608
Plav_0809
Hypothetical protein.
       0.544
Plav_0810
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: fal:FRAAL2628 putative enoyl-CoA hydratase/isomerase, involved in phenylacetic acid degradation; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.416
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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