STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_0816TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase; KEGG: mes:Meso_2469 asparagine synthase (glutamine-hydrolyzing). (590 aa)    
Predicted Functional Partners:
Plav_0815
Glutathione synthase; PFAM: GCN5-related N-acetyltransferase; RimK domain protein ATP-grasp; KEGG: mes:Meso_2468 GCN5-related N-acetyltransferase.
 
 
 0.980
purA
Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
  
 
 0.939
Plav_0814
PFAM: peptidase M20; peptidase M42 family protein; KEGG: mgm:Mmc1_0220 peptidase M42 family protein.
 
  
 0.933
pyrB
TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: bra:BRADO4502 aspartate carbamoyltransferase (catalytic subunit); Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
 
 0.932
argG
PFAM: argininosuccinate synthase; KEGG: rde:RD1_0417 argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
   
 0.927
Plav_0095
PFAM: aminotransferase class I and II; KEGG: zmo:ZMO1682 aspartate aminotransferase.
    
 0.908
Plav_2300
PFAM: aminotransferase class I and II; KEGG: aspartate aminotransferase.
    
 0.908
Plav_0733
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
     
 0.902
Plav_1743
TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; KEGG: mlo:mll3437 aspartokinase, alpha and beta subunits; Belongs to the aspartokinase family.
  
 
 0.897
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
  
 0.538
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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