STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_0854PFAM: major facilitator superfamily MFS_1; KEGG: mmr:Mmar10_0880 major facilitator superfamily MFS_1. (416 aa)    
Predicted Functional Partners:
Plav_0477
KEGG: hypothetical protein.
  
   
 0.607
Plav_1883
PFAM: TonB-dependent receptor; KEGG: mmr:Mmar10_1609 TonB-dependent receptor.
 
  
 0.573
Plav_0434
KEGG: mmr:Mmar10_0515 hypothetical protein.
  
   
 0.547
Plav_0855
PFAM: Male sterility domain; KEGG: rpa:RPA2985 conserved unknownl protein.
       0.531
Plav_0296
PFAM: Peptidoglycan-binding domain 1 protein; protein of unknown function DUF1036; KEGG: bja:blr8102 hypothetical protein.
  
     0.504
Plav_0856
Citrate synthase; PFAM: regulatory protein MerR; Citrate synthase; KEGG: rxy:Rxyl_2556 citrate synthase.
  
  
 0.457
Plav_0773
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mul:MUL_2390 hypothetical protein.
  
   
 0.451
Plav_1964
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: bra:BRADO6238 glutamate synthase [NADPH] large chain (NADPH-GOGAT).
     
 0.437
Plav_2660
KEGG: mmr:Mmar10_1086 membrane protein-like protein.
  
     0.429
Plav_0234
TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; KEGG: ret:RHE_CH00206 pilus assembly protein.
  
     0.425
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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