STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_0915KEGG: pde:Pden_2891 phage-related minor tail protein-like. (205 aa)    
Predicted Functional Partners:
Plav_0918
TIGRFAM: putative phage cell wall peptidase, NlpC/P60 family; PFAM: NLP/P60 protein; KEGG: nha:Nham_1425 putative phage cell wall peptidase, NlpC/P60.
 
  
 0.966
Plav_0913
KEGG: atc:AGR_C_1758 hypothetical protein.
 
    0.961
Plav_0920
KEGG: nwi:Nwi_0791 hypothetical protein.
 
  
 0.961
Plav_0916
KEGG: pde:Pden_2890 hypothetical protein.
 
    0.960
Plav_0917
KEGG: nwi:Nwi_0795 hypothetical protein.
 
     0.951
Plav_0919
KEGG: nwi:Nwi_0792 gene transfer agent (GTA) like protein.
 
   
 0.951
Plav_0910
KEGG: rpe:RPE_1916 gene transfer agent (GTA) orfg8.
 
    0.824
Plav_0903
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: rpe:RPE_1895 phage portal protein, HK97 family.
 
  
 0.823
Plav_0905
TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: bov:BOV_0589 caudovirus prohead protease.
 
    0.817
Plav_0906
TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: bms:BR0589 major capsid protein, HK97 family.
    0.814
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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