STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_0921Hypothetical protein. (120 aa)    
Predicted Functional Partners:
Plav_0913
KEGG: atc:AGR_C_1758 hypothetical protein.
       0.516
Plav_0914
KEGG: nwi:Nwi_1176 phage conserved hypothetical protein.
       0.516
Plav_0915
KEGG: pde:Pden_2891 phage-related minor tail protein-like.
       0.516
Plav_0916
KEGG: pde:Pden_2890 hypothetical protein.
       0.516
Plav_0917
KEGG: nwi:Nwi_0795 hypothetical protein.
       0.516
Plav_0918
TIGRFAM: putative phage cell wall peptidase, NlpC/P60 family; PFAM: NLP/P60 protein; KEGG: nha:Nham_1425 putative phage cell wall peptidase, NlpC/P60.
       0.516
Plav_0919
KEGG: nwi:Nwi_0792 gene transfer agent (GTA) like protein.
       0.516
Plav_0920
KEGG: nwi:Nwi_0791 hypothetical protein.
       0.516
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.